Just a thought...
You did pull the sliders off the fork tubes to check straightness, correct?
You really need to fully disassemble the fork tubes/sliders to properly check for problems. Also fully assemble forks, sliders, and axle into triple tree without springs and make sure the travel is free over the full range. If there is any noticeable drag at any point in the travel, it is likely the fork tube(s) is/are bent.
Did you try alternately rotating the left and right tubes 180? and see if the axle alignment changes. It should if the fork tube(s) is/are bent.
My 2?...