Well . . . a complete tool kit was a nice surprise with everything you need to take most of the bike apart. Cheap drop forged stuff, but the spark plug wrench is worthwhile. Unlike the ST though, it didn't have the piece of foam that came with the solitary allen wrench.
The side hard boxes came with both interior organizer nets as well as good quality carry bags. I use the bags and the nets are stored in the garage somewhere.
That's all I can think of other than the extra lock. Everything else was ready to go.
Shuey