I'm glad to see this in print, because it just proves what engineers already know. Sometimes you find problems late in the design cycle that can't be properly fixed, so you just have to deal with it as best you can and ship it. I read often enough how "Honda designed it that way, and they know what they're doing" and that is true 99% of the time, but its that 1% that makes you have to question things when you find something that doesn't make sense.
What surprises me about the 1300 engine bolts is there are hundreds of bikes with the engine as a stressed frame member, I wonder why this was different from all the others? More trapped engine heat possibly, so the bolts heat up more than on other designs?
I was also not surprised to see the part about the Japanese test riders being hesitant to tell the engineers about handling issues because they didn't want to criticize. That's a Japanese cultural thing, I had to take a class to learn about that before going to Japan to work with a facility in Tokyo years ago.