Hello. I am doing a wiring rebuilding thread soon, maybe a week or two ahead. Mine had all the engine harness burned down and had to make them again. Also I'm installing a GPS tracker, alarm, radar warning setup, heated grips and a couple more things. Maybe you could be interested in it.
For your bike, first thing, wires are just a piece of copper getting to other place. Is not a monster, do not be afraid of it, you can do it, it just need PATIENCE, a lot of it sometimes. Don't get dissapointed or down because of it, the solution is there and it's just a matter of work and some time.
I'm telling you what I would do first.
Some engines can crank and don't turn on because low voltage. It can be your situation.
Get that battery full loaded and try again, it sounds like a broken alternator to me at first "glance". Check out battery voltage with engine on, should be around 14, anything under 13 is bad. It can be under 13 V if you are not riding with lights ON, but it depends on a lot of things.
If it start good with a full battery, can be the alternator. BUT also it can be a bad battery. They last like 5 years, even if you are not using them. They degrade chemically in spite of they don't get bad as soon like when you are using them frequently.
As someone already said, can be a bad gas gauge. Check out if you really have gasoline. Also it can be a bad pump. I've had situations where pumps failed only when hot, after half an hour of use. THREE TIMES did I have this situation. Be aware not to start dissasembling stuff without checking that. Our gasoline pump it's a high pressure pump that's ON al the time when riding the bike. It gets broken like the consuming product it is. For last, if you have spark, good cranking and gas level, try the pump. Having low gas level so it doesn't get spilled, you can take the returning hose from the intake and see if it returns gas with good pressure. Also it can return gas but have no pressure, don't be fooled because of that, you need pressure for that in order to spray the gasoline properly.
I hope all this helps.
Also, it can be that the extra stuff of the wiring could be easily detected, I'm sure it's a paralel wiring, but I never touched something like yours and that should be taken in consideration. I would look for an extra big, long wiring harness just plugged in a couple places. THAT should be all those wirings you want to take out.