I was wondering if this thread would eventually peter out, but I see it has a 'motor' of its own still.
I'll jump in.
I've been a lot of miles on HD TC88 and TC96 engines. Via the handy oil dipstick integrated thermometer, I recorded an oil temp in a Softtail tank of over 300 once in a hot stop and go parade (almost 350 if I remember right but I really don't remember exactly), but no rear cylinder shutdown.
After that I asked the HD shop guys about that automatic rear cylinder 'cooling feature', and the response I got was that it was only ever availabe on the cop bikes and never worked that well and never made it into the non-cop bikes.
I have been told that on the new fly-by-wire throttle bikes (08 and later touring models I think) that rolling the throttle forward (away from you) at idle now invokes the rear cylinder cooling function by shutting off spark and letting the fuel still flow through to absorb the heat. Something you could do at a red light or when stopped in traffic.
I have not tried it on a running bike, but I did roll a throttle forward on a bike on the showroom floor and it felt like there was something like that there.
Anyway, even with all that air-cooled heat coming off the HD, the ST is still by far hotter around the feet. But you can't beat 'three bars' on the temp gauge that are rock solid no matter what the heat outside, and I have never shut off the ST in stop and go traffic jam. I've done it on the HD plenty of times tho.